VCF files report the somatic variants that were detected by each of the four variant callers. The GDC DNA-Seq somatic variant-calling pipeline compares a set of matched tumor/normal alignments and produces a VCF file. fa-file-text Download PDF /Data/PDF/Data_UG.pdf.Bioinformatics Pipeline: Protein Expression.Bioinformatics Pipeline: Methylation Liftover Pipeline.Bioinformatics Pipeline: Copy Number Variation Analysis.Bioinformatics Pipeline: miRNA Analysis.Bioinformatics Pipeline: DNA-Seq Analysis.fa-file-text Download PDF /Data_Transfer_Tool/PDF/Data_Transfer_Tool_UG.pdf.Data Transfer Tool Command Line Documentation. fa-file-text Download PDF /Data_Submission_Portal/PDF/Data_Submission_Portal_UG.pdf.Before Submitting Data to the GDC Portal.fa-file-text Download PDF /Data_Portal/PDF/Data_Portal_UG.pdf.fa-file-text Download PDF /API/PDF/API_UG.pdf.Appendix C: Format of Submission Queries and Responses.
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